From 67de54d70ee918bbaf537cb2c119990c4a70c9a7 Mon Sep 17 00:00:00 2001 From: Ellie Date: Thu, 22 Aug 2024 16:55:48 +0100 Subject: add convert parquet to df function --- src/load_lambda.py | 50 ++++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 48 insertions(+), 2 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index c6a8e60..2f0c33a 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -1,2 +1,48 @@ -def lambda_handler(): - pass +import boto3 +from botocore.exceptions import ClientError +from pg8000.native import Connection, InterfaceError, identifier +import pandas as pd +import pyarrow.parquet as pq +from io import BytesIO + +from botocore.exceptions import ClientError +import logging + + +logger = logging.getLogger(__name__) + +logging.basicConfig( + format="{asctime} - {levelname} - {message}", + style="{", + datefmt="%Y-%m-%d %H:%M", + level=logging.DEBUG, +) + +logging.getLogger("botocore").setLevel(logging.WARNING) + +def convert_parquet_files_to_dfs(bucket_name=None, client=None): + try: + if client is None: + client = boto3.client("s3") + if bucket_name is None: + bucket_name = "transform_bucket" + files = client.list_objects_v2(Bucket=bucket_name) + + dfs = [] + for file in files: + file_key = file['Key'] + try: + file_obj = client.get_object(Bucket=bucket_name, Key=file_key) + parquet_file = pq.ParquetFile(BytesIO(file_obj['body'].read())) + df = parquet_file.read().to_pandas() + dfs.append(df) + except ClientError as e: + logger.error(f"Unable to retrieve S3 object {file_key}: {e}") + except ValueError as value_error: + logger.error(f"Unable to list objects: {value_error}") + raise + except ClientError as client_error: + logger.error(f"Unable to list objects: {client_error}") + + return dfs + \ No newline at end of file -- cgit v1.2.3 From 6bf831c5387408e92a63cb5667aab8f415b536e4 Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 09:40:08 +0100 Subject: add improved convert parquet files to df function --- src/load_lambda.py | 33 +++++++++++++++++++-------------- 1 file changed, 19 insertions(+), 14 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 2f0c33a..1813db4 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -1,11 +1,8 @@ import boto3 from botocore.exceptions import ClientError -from pg8000.native import Connection, InterfaceError, identifier import pandas as pd import pyarrow.parquet as pq from io import BytesIO - -from botocore.exceptions import ClientError import logging @@ -19,7 +16,9 @@ logging.basicConfig( ) logging.getLogger("botocore").setLevel(logging.WARNING) - + +# list and then retrieve parquet files from S3 bucket +# convert parquet files into dataframes and return a list of dataframes def convert_parquet_files_to_dfs(bucket_name=None, client=None): try: if client is None: @@ -29,20 +28,26 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): files = client.list_objects_v2(Bucket=bucket_name) dfs = [] - for file in files: - file_key = file['Key'] - try: - file_obj = client.get_object(Bucket=bucket_name, Key=file_key) - parquet_file = pq.ParquetFile(BytesIO(file_obj['body'].read())) - df = parquet_file.read().to_pandas() - dfs.append(df) - except ClientError as e: - logger.error(f"Unable to retrieve S3 object {file_key}: {e}") + if "Contents" in files: + for file in files["Contents"]: + file_key = file['Key'] + try: + file_obj = client.get_object(Bucket=bucket_name, Key=file_key) + parquet_file = pq.ParquetFile(BytesIO(file_obj['Body'].read())) + df = parquet_file.read().to_pandas() + dfs.append(df) + except ClientError as e: + logger.error(f"Unable to retrieve S3 object {file_key}: {e}") + except Exception as e: + logger.error(f"Unable to process file {file_key}: {e}") + else: + logger.error(f"No files found in {bucket_name}.") + return [] except ValueError as value_error: logger.error(f"Unable to list objects: {value_error}") raise except ClientError as client_error: logger.error(f"Unable to list objects: {client_error}") + raise return dfs - \ No newline at end of file -- cgit v1.2.3 From 265d61c34c3a56b7e74333911e65d3148b2945b4 Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 09:47:52 +0100 Subject: add get transform bucket function --- src/load_lambda.py | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 1813db4..a3fd996 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -17,6 +17,20 @@ logging.basicConfig( logging.getLogger("botocore").setLevel(logging.WARNING) +# get transform bucket +def transform_bucket(client=None): + if client is None: + client = boto3.client("s3") + response = client.list_buckets() + transform_bucket_filter = [ + bucket["Name"] for bucket in response["Buckets"] if "transform" in bucket["Name"] + ] + + if not transform_bucket_filter: + raise ValueError("No transform_bucket found") + + return transform_bucket_filter[0] + # list and then retrieve parquet files from S3 bucket # convert parquet files into dataframes and return a list of dataframes def convert_parquet_files_to_dfs(bucket_name=None, client=None): @@ -24,7 +38,7 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): if client is None: client = boto3.client("s3") if bucket_name is None: - bucket_name = "transform_bucket" + bucket_name = transform_bucket(client) files = client.list_objects_v2(Bucket=bucket_name) dfs = [] -- cgit v1.2.3 From 09c8191ce983e4335cfb131d21ddb5413b849cfb Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 11:18:24 +0100 Subject: add tests --- src/load_lambda.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--- tests/test_load_lambda.py | 3 +-- 2 files changed, 59 insertions(+), 5 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index a3fd996..d95c27a 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -4,6 +4,9 @@ import pandas as pd import pyarrow.parquet as pq from io import BytesIO import logging +import json +from src.extract_lambda import retrieve_secrets, connect_to_database +from sqlalchemy import create_engine logger = logging.getLogger(__name__) @@ -17,6 +20,43 @@ logging.basicConfig( logging.getLogger("botocore").setLevel(logging.WARNING) +def lambda_handler(event, context): + db = None + try: + uploaded_tables = upload_dfs_to_database() + if uploaded_tables == []: + return { + "statusCode": 200, + "body": json.dumps("No datframes were uploaded."), + } + return { + "statusCode": 200, + "body": json.dumps( + f"""The following dataframes were uploaded successfully: + {', '.join(upload_dfs_to_database['updated'])}.""" + ), + } + except Exception as e: + logger.error(f"Error: {e}", exc_info=True) + return {"statusCode": 500, "body": json.dumps("Internal server error.")} + finally: + if db: + db.close() + +# connect to database, slightly different way of doing it, to allow manipulation through pandas +def connect_to_db_and_return_engine(): + secrets = json.loads(retrieve_secrets("bentley-RDS-credentials")) #need to amend retrieve secrets function + host = secrets["host"] + port = secrets["port"] + user = secrets["user"] + password = secrets["password"] + database = secrets["database"] + conn_str = f'postgresql+pg8000://{user}:{password}@{host}:{port}/{database}' + engine = create_engine(conn_str) #interface between python (pandas) and SQL + return engine + + + # get transform bucket def transform_bucket(client=None): if client is None: @@ -41,7 +81,7 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): bucket_name = transform_bucket(client) files = client.list_objects_v2(Bucket=bucket_name) - dfs = [] + dfs = {} if "Contents" in files: for file in files["Contents"]: file_key = file['Key'] @@ -49,7 +89,7 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): file_obj = client.get_object(Bucket=bucket_name, Key=file_key) parquet_file = pq.ParquetFile(BytesIO(file_obj['Body'].read())) df = parquet_file.read().to_pandas() - dfs.append(df) + dfs[file_key] = df except ClientError as e: logger.error(f"Unable to retrieve S3 object {file_key}: {e}") except Exception as e: @@ -64,4 +104,19 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): logger.error(f"Unable to list objects: {client_error}") raise - return dfs + return dfs + +def upload_dfs_to_database(): + uploaded = [] + dict_of_dfs = convert_parquet_files_to_dfs() + db_engine = connect_to_db_and_return_engine() + try: + for table_name, df in dict_of_dfs: + df.to_sql(table_name, con=db_engine, ifexists="replace", index=False) + uploaded.append(table_name) + except Exception as e: + logger.error(f"Error uploading dataframes: {e}") + db_engine.dispose() + return uploaded + + # aiming to return a list of uploaded tables \ No newline at end of file diff --git a/tests/test_load_lambda.py b/tests/test_load_lambda.py index 0572340..d9ea918 100644 --- a/tests/test_load_lambda.py +++ b/tests/test_load_lambda.py @@ -1,8 +1,7 @@ -import boto3 import pandas as pd import pyarrow.parquet as pq from io import BytesIO -from src.load_lambda import convert_parquet_files_to_dataframes +from src.load_lambda import convert_parquet_files_to_dfs class TestConvertParquetToDFs: def test_convert_parquet_to_dfs_returns_df(): -- cgit v1.2.3 From 65289cdd17359c6a29560339e134e0ddf9461ce0 Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 12:08:09 +0100 Subject: add amendments to load lambda --- src/load_lambda.py | 66 ++++++++++++++++++++++++++++++------------------------ 1 file changed, 37 insertions(+), 29 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index d95c27a..f92bb45 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -1,11 +1,11 @@ import boto3 -from botocore.exceptions import ClientError +from botocore.exceptions import ClientError, InterfaceError import pandas as pd import pyarrow.parquet as pq from io import BytesIO import logging import json -from src.extract_lambda import retrieve_secrets, connect_to_database +from src.extract_lambda import retrieve_secrets from sqlalchemy import create_engine @@ -18,67 +18,74 @@ logging.basicConfig( level=logging.DEBUG, ) -logging.getLogger("botocore").setLevel(logging.WARNING) +logging.getLogger("botocore").setLevel(logging.INFO) + def lambda_handler(event, context): - db = None try: uploaded_tables = upload_dfs_to_database() - if uploaded_tables == []: + if not uploaded_tables: return { "statusCode": 200, - "body": json.dumps("No datframes were uploaded."), + "body": json.dumps("No dataframes were uploaded."), } return { "statusCode": 200, "body": json.dumps( f"""The following dataframes were uploaded successfully: - {', '.join(upload_dfs_to_database['updated'])}.""" + {', '.join(uploaded_tables)} .""" ), } except Exception as e: logger.error(f"Error: {e}", exc_info=True) return {"statusCode": 500, "body": json.dumps("Internal server error.")} - finally: - if db: - db.close() # connect to database, slightly different way of doing it, to allow manipulation through pandas def connect_to_db_and_return_engine(): - secrets = json.loads(retrieve_secrets("bentley-RDS-credentials")) #need to amend retrieve secrets function - host = secrets["host"] - port = secrets["port"] - user = secrets["user"] - password = secrets["password"] - database = secrets["database"] - conn_str = f'postgresql+pg8000://{user}:{password}@{host}:{port}/{database}' - engine = create_engine(conn_str) #interface between python (pandas) and SQL - return engine - - + try: + secrets = json.loads(retrieve_secrets("bentley-RDS-credentials")) #need to amend retrieve secrets function + host = secrets["host"] + port = secrets["port"] + user = secrets["user"] + password = secrets["password"] + database = secrets["database"] + conn_str = f'postgresql+pg8000://{user}:{password}@{host}:{port}/{database}' + engine = create_engine(conn_str) #interface between python (pandas) and SQL + return engine + except Exception as e: + logger.error(f"Interface error: {e}") + raise RuntimeError("Failed to create database engine") + # get transform bucket -def transform_bucket(client=None): +def get_transform_bucket(client=None): if client is None: client = boto3.client("s3") - response = client.list_buckets() + try: + response = client.list_buckets() + except ClientError as e: + logger.error(f"Error listing S3 buckets: {e}") + raise RuntimeError("Error listing S3 buckets") + transform_bucket_filter = [ bucket["Name"] for bucket in response["Buckets"] if "transform" in bucket["Name"] ] if not transform_bucket_filter: - raise ValueError("No transform_bucket found") + logger.error("No transform bucket found") + raise ValueError("No transform bucket found") return transform_bucket_filter[0] # list and then retrieve parquet files from S3 bucket -# convert parquet files into dataframes and return a list of dataframes +# convert parquet files into dataframes +# return a dictionary of dataframes with name as key, and dataframe object as value def convert_parquet_files_to_dfs(bucket_name=None, client=None): try: if client is None: client = boto3.client("s3") if bucket_name is None: - bucket_name = transform_bucket(client) + bucket_name = get_transform_bucket() files = client.list_objects_v2(Bucket=bucket_name) dfs = {} @@ -96,7 +103,7 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): logger.error(f"Unable to process file {file_key}: {e}") else: logger.error(f"No files found in {bucket_name}.") - return [] + return {} except ValueError as value_error: logger.error(f"Unable to list objects: {value_error}") raise @@ -111,11 +118,12 @@ def upload_dfs_to_database(): dict_of_dfs = convert_parquet_files_to_dfs() db_engine = connect_to_db_and_return_engine() try: - for table_name, df in dict_of_dfs: - df.to_sql(table_name, con=db_engine, ifexists="replace", index=False) + for table_name, df in dict_of_dfs.items(): + df.to_sql(table_name, con=db_engine, if_exists="replace", index=False) uploaded.append(table_name) except Exception as e: logger.error(f"Error uploading dataframes: {e}") + raise db_engine.dispose() return uploaded -- cgit v1.2.3 From f3bb705a31ab9d94dc856c2de0da4b7b73a57fae Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 12:38:25 +0100 Subject: add get transform bucket test --- src/load_lambda.py | 2 +- tests/test_load_lambda.py | 48 +++++++++++++++++++++++++++++++++++++++++++---- 2 files changed, 45 insertions(+), 5 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index f92bb45..a9d5ac5 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -1,5 +1,5 @@ import boto3 -from botocore.exceptions import ClientError, InterfaceError +from botocore.exceptions import ClientError import pandas as pd import pyarrow.parquet as pq from io import BytesIO diff --git a/tests/test_load_lambda.py b/tests/test_load_lambda.py index d9ea918..2392f10 100644 --- a/tests/test_load_lambda.py +++ b/tests/test_load_lambda.py @@ -1,8 +1,48 @@ import pandas as pd import pyarrow.parquet as pq from io import BytesIO -from src.load_lambda import convert_parquet_files_to_dfs +from moto import mock_aws +import boto3 +import os +import pytest +from src.load_lambda import lambda_handler, connect_to_db_and_return_engine, get_transform_bucket, convert_parquet_files_to_dfs, upload_dfs_to_database -class TestConvertParquetToDFs: - def test_convert_parquet_to_dfs_returns_df(): - \ No newline at end of file +@pytest.fixture(scope="class") +def aws_credentials(): + os.environ["AWS_ACCESS_KEY_ID"] = "testing" + os.environ["AWS_SECRET_ACCESS_KEY"] = "testing" + os.environ["AWS_SECURIT_TOKEN"] = "testing" + os.environ["AWS_SESSION_TOKEN"] = "testing" + os.environ["AWS_DEFAULT_REGION"] = "eu-west-2" + + +@pytest.fixture(scope="class") +def s3_client(aws_credentials): + with mock_aws(): + yield boto3.client("s3") + +@pytest.fixture(scope="function") +def s3_mock_bucket(s3_client): + bucket = s3_client.create_bucket( + Bucket="transform_bucket", + CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, + ) + return bucket + + +class TestLambdaHandler: + pass + +class TestConnectToDBAndReturnEngine: + pass + +class TestGetTransformBucket: + def test_get_transform_bucket_returns_string(self, s3_client, s3_mock_bucket): + result = get_transform_bucket(s3_client) + assert result == "transform_bucket" + +class TestConvertParquetToDfs: + pass + +class TestUploadDfsToDatabase: + pass \ No newline at end of file -- cgit v1.2.3 From 0f8f376fe806ea72f056356cc043213f61159697 Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 14:35:36 +0100 Subject: add retrieve secrets function --- src/load_lambda.py | 21 ++++++++++++++++++++- 1 file changed, 20 insertions(+), 1 deletion(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index a9d5ac5..2dc90ba 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -40,10 +40,29 @@ def lambda_handler(event, context): logger.error(f"Error: {e}", exc_info=True) return {"statusCode": 500, "body": json.dumps("Internal server error.")} +def retrieve_secrets(): + secret_name = "bentley-RDS-credentials" + region_name = "eu-west-2" + + # Create a Secrets Manager client + session = boto3.session.Session() + client = session.client(service_name="secretsmanager", region_name=region_name) + + try: + get_secret_value_response = client.get_secret_value(SecretId=secret_name) + except ClientError as e: + logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}") + raise e + except KeyError: + logger.error(f"Secret {secret_name} does not contain a SecretString") + raise ValueError(f"Secret {secret_name} does not contain a SecretString") + + return get_secret_value_response["SecretString"] + # connect to database, slightly different way of doing it, to allow manipulation through pandas def connect_to_db_and_return_engine(): try: - secrets = json.loads(retrieve_secrets("bentley-RDS-credentials")) #need to amend retrieve secrets function + secrets = json.loads(retrieve_secrets()) host = secrets["host"] port = secrets["port"] user = secrets["user"] -- cgit v1.2.3 From 500ebf24c746ec87c9c846f5a82d638cc23983b9 Mon Sep 17 00:00:00 2001 From: Ellie Date: Fri, 23 Aug 2024 17:04:08 +0100 Subject: add amendendments for upload_dfs_to_db --- src/load_lambda.py | 47 ++++++++++++++++++++++++++++++++++------------- 1 file changed, 34 insertions(+), 13 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 2dc90ba..8eaea32 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -24,7 +24,7 @@ logging.getLogger("botocore").setLevel(logging.INFO) def lambda_handler(event, context): try: uploaded_tables = upload_dfs_to_database() - if not uploaded_tables: + if not uploaded_tables["uploaded"]: return { "statusCode": 200, "body": json.dumps("No dataframes were uploaded."), @@ -33,7 +33,7 @@ def lambda_handler(event, context): "statusCode": 200, "body": json.dumps( f"""The following dataframes were uploaded successfully: - {', '.join(uploaded_tables)} .""" + {uploaded_tables["uploaded"]} .""" ), } except Exception as e: @@ -133,17 +133,38 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): return dfs def upload_dfs_to_database(): - uploaded = [] + upload_status = {"uploaded": [], "not_uploaded": []} dict_of_dfs = convert_parquet_files_to_dfs() db_engine = connect_to_db_and_return_engine() - try: - for table_name, df in dict_of_dfs.items(): - df.to_sql(table_name, con=db_engine, if_exists="replace", index=False) - uploaded.append(table_name) - except Exception as e: - logger.error(f"Error uploading dataframes: {e}") - raise + immutable_df_dict = ["dim_counterparty.parquet", + "dim_date.parquet", #this needs to be mutable + "dim_location.parquet", + "dim_staff.parquet", + "dim_design.parquet"] + mutable_df_dict = ["fact_sales_order", + "fact_purchase_order", + "fact_payment", + "dim_currency"] + + for file_name, df in dict_of_dfs.items(): + if file_name in immutable_df_dict: + table_name = file_name.split(".")[0] + try: + df.to_sql(table_name, con=db_engine, schema="project_team_2", if_exists="overwrite", index=False) + upload_status["uploaded"].append(table_name) + except Exception as e: + logger.error(f"Error uploading dataframe {file_name} to database: {e}") + raise + elif file_name.rsplit('_', 1)[0] in mutable_df_dict: + table_name = file_name.rsplit('_', 1)[0] + try: + df.to_sql(table_name, con=db_engine, schema="project_team_2", if_exists="overwrite", index=False) + upload_status["uploaded"].append(table_name) + except Exception as e: + logger.error(f"Error uploading dataframe {file_name} to database: {e}") + raise + else: + upload_status["not_uploaded"].append(file_name) + logger.error(f"{file_name} does not correspond with table in database") db_engine.dispose() - return uploaded - - # aiming to return a list of uploaded tables \ No newline at end of file + return upload_status \ No newline at end of file -- cgit v1.2.3 From 69edb14dad584d45fa6a83a90c08292b84795507 Mon Sep 17 00:00:00 2001 From: "deepsource-autofix[bot]" <62050782+deepsource-autofix[bot]@users.noreply.github.com> Date: Fri, 23 Aug 2024 16:11:45 +0000 Subject: style: format code with Autopep8, Black and Ruff Formatter This commit fixes the style issues introduced in 0ff2956 according to the output from Autopep8, Black and Ruff Formatter. Details: https://github.com/ajschofield/de-project-bentley/pull/95 --- src/load_lambda.py | 75 ++++++++++++++++++++++++++++++++--------------- tests/test_load_lambda.py | 44 +++++++++++++++++---------- 2 files changed, 80 insertions(+), 39 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 8eaea32..6e6bc80 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -40,6 +40,7 @@ def lambda_handler(event, context): logger.error(f"Error: {e}", exc_info=True) return {"statusCode": 500, "body": json.dumps("Internal server error.")} + def retrieve_secrets(): secret_name = "bentley-RDS-credentials" region_name = "eu-west-2" @@ -59,7 +60,10 @@ def retrieve_secrets(): return get_secret_value_response["SecretString"] + # connect to database, slightly different way of doing it, to allow manipulation through pandas + + def connect_to_db_and_return_engine(): try: secrets = json.loads(retrieve_secrets()) @@ -68,13 +72,14 @@ def connect_to_db_and_return_engine(): user = secrets["user"] password = secrets["password"] database = secrets["database"] - conn_str = f'postgresql+pg8000://{user}:{password}@{host}:{port}/{database}' - engine = create_engine(conn_str) #interface between python (pandas) and SQL + conn_str = f"postgresql+pg8000://{user}:{password}@{host}:{port}/{database}" + # interface between python (pandas) and SQL + engine = create_engine(conn_str) return engine except Exception as e: logger.error(f"Interface error: {e}") raise RuntimeError("Failed to create database engine") - + # get transform bucket def get_transform_bucket(client=None): @@ -85,9 +90,11 @@ def get_transform_bucket(client=None): except ClientError as e: logger.error(f"Error listing S3 buckets: {e}") raise RuntimeError("Error listing S3 buckets") - + transform_bucket_filter = [ - bucket["Name"] for bucket in response["Buckets"] if "transform" in bucket["Name"] + bucket["Name"] + for bucket in response["Buckets"] + if "transform" in bucket["Name"] ] if not transform_bucket_filter: @@ -96,9 +103,12 @@ def get_transform_bucket(client=None): return transform_bucket_filter[0] + # list and then retrieve parquet files from S3 bucket # convert parquet files into dataframes -# return a dictionary of dataframes with name as key, and dataframe object as value +# return a dictionary of dataframes with name as key, and dataframe object as value + + def convert_parquet_files_to_dfs(bucket_name=None, client=None): try: if client is None: @@ -110,10 +120,10 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): dfs = {} if "Contents" in files: for file in files["Contents"]: - file_key = file['Key'] + file_key = file["Key"] try: file_obj = client.get_object(Bucket=bucket_name, Key=file_key) - parquet_file = pq.ParquetFile(BytesIO(file_obj['Body'].read())) + parquet_file = pq.ParquetFile(BytesIO(file_obj["Body"].read())) df = parquet_file.read().to_pandas() dfs[file_key] = df except ClientError as e: @@ -132,34 +142,51 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): return dfs + def upload_dfs_to_database(): upload_status = {"uploaded": [], "not_uploaded": []} dict_of_dfs = convert_parquet_files_to_dfs() db_engine = connect_to_db_and_return_engine() - immutable_df_dict = ["dim_counterparty.parquet", - "dim_date.parquet", #this needs to be mutable - "dim_location.parquet", - "dim_staff.parquet", - "dim_design.parquet"] - mutable_df_dict = ["fact_sales_order", - "fact_purchase_order", - "fact_payment", - "dim_currency"] - + immutable_df_dict = [ + "dim_counterparty.parquet", + "dim_date.parquet", # this needs to be mutable + "dim_location.parquet", + "dim_staff.parquet", + "dim_design.parquet", + ] + mutable_df_dict = [ + "fact_sales_order", + "fact_purchase_order", + "fact_payment", + "dim_currency", + ] + for file_name, df in dict_of_dfs.items(): if file_name in immutable_df_dict: table_name = file_name.split(".")[0] try: - df.to_sql(table_name, con=db_engine, schema="project_team_2", if_exists="overwrite", index=False) + df.to_sql( + table_name, + con=db_engine, + schema="project_team_2", + if_exists="overwrite", + index=False, + ) upload_status["uploaded"].append(table_name) except Exception as e: logger.error(f"Error uploading dataframe {file_name} to database: {e}") raise - elif file_name.rsplit('_', 1)[0] in mutable_df_dict: - table_name = file_name.rsplit('_', 1)[0] + elif file_name.rsplit("_", 1)[0] in mutable_df_dict: + table_name = file_name.rsplit("_", 1)[0] try: - df.to_sql(table_name, con=db_engine, schema="project_team_2", if_exists="overwrite", index=False) - upload_status["uploaded"].append(table_name) + df.to_sql( + table_name, + con=db_engine, + schema="project_team_2", + if_exists="overwrite", + index=False, + ) + upload_status["uploaded"].append(table_name) except Exception as e: logger.error(f"Error uploading dataframe {file_name} to database: {e}") raise @@ -167,4 +194,4 @@ def upload_dfs_to_database(): upload_status["not_uploaded"].append(file_name) logger.error(f"{file_name} does not correspond with table in database") db_engine.dispose() - return upload_status \ No newline at end of file + return upload_status diff --git a/tests/test_load_lambda.py b/tests/test_load_lambda.py index e04ccec..88c71e4 100644 --- a/tests/test_load_lambda.py +++ b/tests/test_load_lambda.py @@ -5,7 +5,14 @@ from moto import mock_aws import boto3 import os import pytest -from src.load_lambda import lambda_handler, connect_to_db_and_return_engine, get_transform_bucket, convert_parquet_files_to_dfs, upload_dfs_to_database +from src.load_lambda import ( + lambda_handler, + connect_to_db_and_return_engine, + get_transform_bucket, + convert_parquet_files_to_dfs, + upload_dfs_to_database, +) + @pytest.fixture(scope="class") def aws_credentials(): @@ -25,12 +32,15 @@ def mock_s3_client(aws_credentials): class TestLambdaHandler: pass + class TestRetrieveSecrets: pass + class TestConnectToDBAndReturnEngine: pass + class TestGetTransformBucket: def test_raises_value_error_if_no_buckets(self, mock_s3_client): with pytest.raises(ValueError, match="No transform bucket found"): @@ -38,35 +48,38 @@ class TestGetTransformBucket: def test_raises_value_error_if_no_transform_bucket(self, mock_s3_client): mock_s3_client.create_bucket( - Bucket="extract_bucket", - CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, - ) + Bucket="extract_bucket", + CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, + ) with pytest.raises(ValueError, match="No transform bucket found"): get_transform_bucket(mock_s3_client) def test_returns_transform_bucket_if_one_bucket(self, mock_s3_client): mock_s3_client.create_bucket( - Bucket="transform_bucket", - CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, - ) + Bucket="transform_bucket", + CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, + ) result = get_transform_bucket(mock_s3_client) assert result == "transform_bucket" def test_only_returns_transform_bucket_if_several_buckets(self, mock_s3_client): mock_s3_client.create_bucket( - Bucket="another_test_bucket", - CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, - ) + Bucket="another_test_bucket", + CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, + ) result = get_transform_bucket(mock_s3_client) assert result == "transform_bucket" + class TestConvertParquetToDfs: def test_function_returns_empty_dictionary_if_no_files(self, mock_s3_client): mock_s3_client.create_bucket( - Bucket="transform_bucket", - CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, - ) - result = convert_parquet_files_to_dfs(bucket_name="transform_bucket", client=mock_s3_client) + Bucket="transform_bucket", + CreateBucketConfiguration={"LocationConstraint": "eu-west-2"}, + ) + result = convert_parquet_files_to_dfs( + bucket_name="transform_bucket", client=mock_s3_client + ) assert result == {} # def test_function_returns_dictionary_with_table_with_file_key(): @@ -74,5 +87,6 @@ class TestConvertParquetToDfs: # result = convert_parquet_files_to_dfs(bucket_name="transform_bucket", client=mock_s3_client) # assert "dim_staff" in result + class TestUploadDfsToDatabase: - pass \ No newline at end of file + pass -- cgit v1.2.3 From 151429859bca904cbacf18f4b169f1f768fa212a Mon Sep 17 00:00:00 2001 From: Ellie Date: Tue, 27 Aug 2024 12:01:53 +0100 Subject: remove import as not required --- src/load_lambda.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 6e6bc80..685c562 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -5,7 +5,6 @@ import pyarrow.parquet as pq from io import BytesIO import logging import json -from src.extract_lambda import retrieve_secrets from sqlalchemy import create_engine @@ -169,7 +168,7 @@ def upload_dfs_to_database(): table_name, con=db_engine, schema="project_team_2", - if_exists="overwrite", + if_exists="append", index=False, ) upload_status["uploaded"].append(table_name) @@ -183,7 +182,7 @@ def upload_dfs_to_database(): table_name, con=db_engine, schema="project_team_2", - if_exists="overwrite", + if_exists="append", index=False, ) upload_status["uploaded"].append(table_name) @@ -195,3 +194,6 @@ def upload_dfs_to_database(): logger.error(f"{file_name} does not correspond with table in database") db_engine.dispose() return upload_status + +if __name__ == "__main__": + lambda_handler(None, None) -- cgit v1.2.3 From 8cd9edde84f4ca706ad93b143c5ff7e3397ce981 Mon Sep 17 00:00:00 2001 From: Ellie Date: Tue, 27 Aug 2024 12:28:58 +0100 Subject: add json.loads to retrieve secrests function --- src/load_lambda.py | 15 +++++++++------ 1 file changed, 9 insertions(+), 6 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 685c562..f08e335 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -40,16 +40,19 @@ def lambda_handler(event, context): return {"statusCode": 500, "body": json.dumps("Internal server error.")} -def retrieve_secrets(): - secret_name = "bentley-RDS-credentials" +def retrieve_secrets(client=None, secret_name=None): + session = boto3.session.Session() region_name = "eu-west-2" - # Create a Secrets Manager client - session = boto3.session.Session() - client = session.client(service_name="secretsmanager", region_name=region_name) + if secret_name == None: + secret_name = "bentley-RDS-credentials" + if client == None: + client = session.client(service_name="secretsmanager", region_name=region_name) + try: get_secret_value_response = client.get_secret_value(SecretId=secret_name) + print(get_secret_value_response) except ClientError as e: logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}") raise e @@ -57,7 +60,7 @@ def retrieve_secrets(): logger.error(f"Secret {secret_name} does not contain a SecretString") raise ValueError(f"Secret {secret_name} does not contain a SecretString") - return get_secret_value_response["SecretString"] + return json.loads(get_secret_value_response["SecretString"]) # connect to database, slightly different way of doing it, to allow manipulation through pandas -- cgit v1.2.3 From d623c42a891f2fe8a26493354af0d9e299f3c526 Mon Sep 17 00:00:00 2001 From: Alex Schofield Date: Tue, 27 Aug 2024 15:19:14 +0100 Subject: refactor: add parameter for sm_secret --- src/load_lambda.py | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index f08e335..11d1d70 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -49,7 +49,6 @@ def retrieve_secrets(client=None, secret_name=None): if client == None: client = session.client(service_name="secretsmanager", region_name=region_name) - try: get_secret_value_response = client.get_secret_value(SecretId=secret_name) print(get_secret_value_response) @@ -66,9 +65,12 @@ def retrieve_secrets(client=None, secret_name=None): # connect to database, slightly different way of doing it, to allow manipulation through pandas -def connect_to_db_and_return_engine(): +def connect_to_db_and_return_engine(sm_secret=None): + if sm_secret is None: + sm_secret = retrieve_secrets() + try: - secrets = json.loads(retrieve_secrets()) + secrets = json.loads(sm_secret) host = secrets["host"] port = secrets["port"] user = secrets["user"] @@ -198,5 +200,6 @@ def upload_dfs_to_database(): db_engine.dispose() return upload_status + if __name__ == "__main__": lambda_handler(None, None) -- cgit v1.2.3 From cbfc98a9f43b5a0dae95337057c18c9dc2a298e3 Mon Sep 17 00:00:00 2001 From: Alex Schofield Date: Tue, 27 Aug 2024 16:00:29 +0100 Subject: wip: update TestLambdaHandler & lambda_handler function --- src/load_lambda.py | 19 +++++++++++-------- tests/test_load_lambda.py | 12 +++++++++--- 2 files changed, 20 insertions(+), 11 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 11d1d70..39fa27d 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -23,18 +23,21 @@ logging.getLogger("botocore").setLevel(logging.INFO) def lambda_handler(event, context): try: uploaded_tables = upload_dfs_to_database() - if not uploaded_tables["uploaded"]: + if uploaded_tables["not_uploaded"]: return { "statusCode": 200, "body": json.dumps("No dataframes were uploaded."), } - return { - "statusCode": 200, - "body": json.dumps( - f"""The following dataframes were uploaded successfully: - {uploaded_tables["uploaded"]} .""" - ), - } + + if uploaded_tables["uploaded"]: + return { + "statusCode": 200, + "body": json.dumps( + f"""The following dataframes were uploaded successfully: + {uploaded_tables["uploaded"]} .""" + ), + } + except Exception as e: logger.error(f"Error: {e}", exc_info=True) return {"statusCode": 500, "body": json.dumps("Internal server error.")} diff --git a/tests/test_load_lambda.py b/tests/test_load_lambda.py index a29b75a..9286e48 100644 --- a/tests/test_load_lambda.py +++ b/tests/test_load_lambda.py @@ -35,7 +35,7 @@ class TestLambdaHandler: def test_lambda_handler_returns_success(self, mocker): mocker.patch( "src.load_lambda.upload_dfs_to_database", - return_value={"uploaded": ["table_one", "table_two"]}, + return_value={"uploaded": ["table_one", "table_two"], "not_uploaded": []}, ) result = lambda_handler(None, None) assert result["statusCode"] == 200 @@ -45,14 +45,20 @@ class TestLambdaHandler: def test_lambda_handler_does_not_upload_anything(self, mocker): mocker.patch( "src.load_lambda.upload_dfs_to_database", - return_value={"uploaded": []}, + return_value={"uploaded": [], "not_uploaded": []}, ) result = lambda_handler(None, None) assert result["statusCode"] == 200 assert "No dataframes were uploaded" in result["body"] def test_lambda_handler_returns_exception(self, mocker): - pass + mocker.patch( + "src.load_lambda.upload_dfs_to_database", + return_value={"test": []}, + ) + + with pytest.raises(Exception): + lambda_handler(None, None) class TestRetrieveSecrets: -- cgit v1.2.3 From 27f89b78775f9b6fd8d3d560689c53db2beb1b64 Mon Sep 17 00:00:00 2001 From: Ellie Date: Tue, 27 Aug 2024 16:39:38 +0100 Subject: add logger error to lambda handler --- src/load_lambda.py | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 39fa27d..9e15af3 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -5,6 +5,7 @@ import pyarrow.parquet as pq from io import BytesIO import logging import json +import traceback from sqlalchemy import create_engine @@ -28,8 +29,7 @@ def lambda_handler(event, context): "statusCode": 200, "body": json.dumps("No dataframes were uploaded."), } - - if uploaded_tables["uploaded"]: + elif uploaded_tables["uploaded"]: return { "statusCode": 200, "body": json.dumps( @@ -37,10 +37,12 @@ def lambda_handler(event, context): {uploaded_tables["uploaded"]} .""" ), } - + else: + logger.error(f"error") + return {"error"} except Exception as e: - logger.error(f"Error: {e}", exc_info=True) - return {"statusCode": 500, "body": json.dumps("Internal server error.")} + logger.error({e}) + return {"statusCode": 500, "body": {e}} def retrieve_secrets(client=None, secret_name=None): -- cgit v1.2.3 From 0915d4fe4e151d6b593467129b51a1322398fc04 Mon Sep 17 00:00:00 2001 From: Ellie Date: Tue, 27 Aug 2024 17:27:21 +0100 Subject: add json.loads --- src/load_lambda.py | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 9e15af3..7339ab9 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -64,7 +64,7 @@ def retrieve_secrets(client=None, secret_name=None): logger.error(f"Secret {secret_name} does not contain a SecretString") raise ValueError(f"Secret {secret_name} does not contain a SecretString") - return json.loads(get_secret_value_response["SecretString"]) + return get_secret_value_response["SecretString"] # connect to database, slightly different way of doing it, to allow manipulation through pandas @@ -72,10 +72,10 @@ def retrieve_secrets(client=None, secret_name=None): def connect_to_db_and_return_engine(sm_secret=None): if sm_secret is None: - sm_secret = retrieve_secrets() + sm_secret = json.loads(retrieve_secrets()) try: - secrets = json.loads(sm_secret) + secrets = sm_secret host = secrets["host"] port = secrets["port"] user = secrets["user"] @@ -171,13 +171,14 @@ def upload_dfs_to_database(): ] for file_name, df in dict_of_dfs.items(): + print(df) if file_name in immutable_df_dict: table_name = file_name.split(".")[0] + print(table_name, "<<<<<") try: df.to_sql( table_name, con=db_engine, - schema="project_team_2", if_exists="append", index=False, ) -- cgit v1.2.3 From 03a5959df25f74d52ed5393c2a5af6b1b9eb34c9 Mon Sep 17 00:00:00 2001 From: T-Aji Date: Wed, 28 Aug 2024 12:48:13 +0100 Subject: refactored functs to include columns instead of drop columns --- src/load_lambda.py | 5 +- src/transform_lambda/dataframes.py | 157 ++++++++++++++++++++----------- src/transform_lambda/transform_lambda.py | 5 +- tests/test_dataframes.py | 2 +- 4 files changed, 111 insertions(+), 58 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 7339ab9..926b4db 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -134,6 +134,9 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): file_obj = client.get_object(Bucket=bucket_name, Key=file_key) parquet_file = pq.ParquetFile(BytesIO(file_obj["Body"].read())) df = parquet_file.read().to_pandas() + print("df", df) + print("type", type(df)) + print(df.columns) dfs[file_key] = df except ClientError as e: logger.error(f"Unable to retrieve S3 object {file_key}: {e}") @@ -148,7 +151,7 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): except ClientError as client_error: logger.error(f"Unable to list objects: {client_error}") raise - + print() return dfs diff --git a/src/transform_lambda/dataframes.py b/src/transform_lambda/dataframes.py index 2a46bd6..bf0556b 100644 --- a/src/transform_lambda/dataframes.py +++ b/src/transform_lambda/dataframes.py @@ -37,30 +37,28 @@ def create_fact_sales_order(dict_of_df): df_sales["agreed_payment_date"] = pd.to_datetime( df_sales["agreed_payment_date"], format="%Y-%m-%d" ) - df_sales = df_sales.drop(labels=["created_at", "last_updated"], axis=1) - - df_sales.reset_index(inplace=True) - return df_sales + fact_sales = df_sales.loc[:, + [ + "sales_order_id", + "created_date", + "created_time", + "last_updated_date", + "last_updated_time", + "staff_id", + "counterparty_id", + "units_sold", + "unit_price", + "currency_id", + "design_id", + "agreed_payment_date", + "agreed_delivery_date", + "agreed_delivery_location_id" + ], + ] + fact_sales.rename(columns={"staff_id": "sales_staff_id"}).reset_index(inplace=True) + - df_sales["created_date"] = df_sales["created_at"].astype("datetime64[ns]").dt.date - df_sales["created_time"] = ( - df_sales["created_at"].astype("datetime64[ns]").dt.floor("s").dt.time - ) - df_sales["last_updated_date"] = ( - df_sales["last_updated"].astype("datetime64[ns]").dt.date - ) - df_sales["last_updated_time"] = ( - df_sales["last_updated"].astype("datetime64[ns]").dt.floor("s").dt.time - ) - df_sales["agreed_delivery_date"] = pd.to_datetime( - df_sales["agreed_delivery_date"], format="%Y-%m-%d" - ) - df_sales["agreed_payment_date"] = pd.to_datetime( - df_sales["agreed_payment_date"], format="%Y-%m-%d" - ) - df_sales = df_sales.drop(labels=["created_at", "last_updated"], axis=1) - df_sales.reset_index(inplace=True) - return df_sales + return fact_sales # no test, same as fact_payment @@ -83,9 +81,27 @@ def create_fact_purchase_orders(dict_of_df): df_po["agreed_payment_date"] = pd.to_datetime( df_po["agreed_payment_date"], format="%Y-%m-%d" ) - df_po = df_po.drop(labels=["created_at", "last_updated"], axis=1) - df_po.reset_index(inplace=True) - return df_po + fact_purchase_order = df_po.loc[:, + [ + "purchase_order_id", + "created_date", + "created_time", + "last_updated_date", + "last_updated_time", + "staff_id", + "counterparty_id", + "item_code", + "item_quantity", + "item_unit_price", + "currency_id", + "agreed_delivery_date", + "agreed_payment_date", + "agreed_delivery_location_id" + ] + + ] + fact_purchase_order.reset_index(inplace=True) + return fact_purchase_order # test passed @@ -109,38 +125,57 @@ def create_fact_payment(dict_of_df): df_payment["payment_date"] = pd.to_datetime( df_payment["payment_date"], format="%Y-%m-%d" ) - df_payment = df_payment.drop(labels=["created_at", "last_updated"], axis=1) - - df_payment.reset_index(inplace=True) - return df_payment + fact_payment = df_payment.loc[:, + [ + "payment_id", + "created_date", + "created_time", + "last_updated_date", + "last_updated_time", + "transaction_id", + "counterparty_id", + "payment_amount", + "currency_id", + "payment_type_id", + "paid", + "payment_date" + ] + ] + fact_payment.reset_index(inplace=True) + return fact_payment # test passed def create_dim_transaction(dict_of_df): - df_transaction = dict_of_df["transaction"].drop( - labels=["created_at", "last_updated"], axis=1 - ) - return df_transaction + dim_transaction = dict_of_df["transaction"].loc[:, + [ + "transaction_id", + "transaction_type", + "sales_order_id", + "purchase_order_id" + ] + ] + return dim_transaction # test passed def create_dim_location(dict_of_df): - df_loc = ( - dict_of_df["address"] - .drop(labels=["created_at", "last_updated"], axis=1) + dim_location = ( + dict_of_df["address"].drop(labels=["created_at", "last_updated"], axis=1) .rename(columns={"address_id": "location_id"}) ) - return df_loc + return dim_location def create_dim_counterparty(dict_of_df): df_prefixed_address = ( dict_of_df["address"] .drop(labels=["created_at", "last_updated"], axis=1) + .rename(columns={"phone": "phone_number"}) .add_prefix("counterparty_legal_", axis=1) ) df_cp = pd.merge( @@ -149,15 +184,18 @@ def create_dim_counterparty(dict_of_df): left_on="legal_address_id", right_on="counterparty_legal_address_id", how="inner", - ) - df_cp.drop( - columns=[ + )#.dropna(inplace=True) + dim_counterparty = df_cp.drop( + labels=[ "legal_address_id", "counterparty_legal_address_id", - ], - inplace=True, + "created_at", + "last_updated", + "commercial_contact", + "delivery_contact" + ], axis=1 ) - return df_cp + return dim_counterparty # test passed @@ -179,6 +217,7 @@ def create_dim_date(dict_of_df): sr_date = pd.array(pd.concat(list_of_date_columns), dtype="datetime64[ns]") df_date = pd.DataFrame(data=sr_date, columns=["date_id"]) df_date.drop_duplicates(inplace=True) + # df_date.dropna(inplace=True) df_date["year"] = df_date["date_id"].dt.year df_date["month"] = df_date["date_id"].dt.month df_date["day"] = df_date["date_id"].dt.day @@ -210,10 +249,11 @@ def scrape_currency_names(): def create_dim_currency(dict_of_df, names=scrape_currency_names()): df_cur = dict_of_df["currency"].drop(labels=["created_at", "last_updated"], axis=1) - dim_cur = pd.merge( - df_cur, names, left_on="currency_code", right_on="currency_code", how="inner" + dim_currency = pd.merge( + df_cur, names, left_on="currency_code", right_on="currency_code", how="left" ) - return dim_cur + dim_currency.drop_duplicates(inplace=True) + return dim_currency # tests passed @@ -221,7 +261,12 @@ def create_dim_currency(dict_of_df, names=scrape_currency_names()): def create_dim_payment_type(dict_of_df): df_payment_type = dict_of_df["payment_type"] - dim_payment_type = df_payment_type.loc[:, ["payment_type_id", "payment_type_name"]] + dim_payment_type = df_payment_type.loc[:, + [ + "payment_type_id", + "payment_type_name" + ] + ] return dim_payment_type @@ -230,8 +275,13 @@ def create_dim_payment_type(dict_of_df): def create_dim_design(dict_of_df): df_design = dict_of_df["design"] - dim_design = df_design.loc[ - :, ["design_id", "design_name", "file_name", "file_location"] + dim_design = df_design.loc[:, + [ + "design_id", + "design_name", + "file_name", + "file_location" + ] ] return dim_design @@ -243,15 +293,14 @@ def create_dim_staff(dict_of_df): staff_department = pd.merge( dict_of_df["staff"], dict_of_df["department"], on="department_id", how="left" ) - dim_staff = staff_department.loc[ - :, + dim_staff = staff_department.loc[:, [ "staff_id", "first_name", "last_name", "department_name", "location", - "email_address", - ], + "email_address" + ] ] return dim_staff diff --git a/src/transform_lambda/transform_lambda.py b/src/transform_lambda/transform_lambda.py index 93b2284..1453c6c 100644 --- a/src/transform_lambda/transform_lambda.py +++ b/src/transform_lambda/transform_lambda.py @@ -42,7 +42,7 @@ TABLES = [ "department", "currency", "design", - "payment_type", + "payment_type" ] @@ -73,7 +73,8 @@ def lambda_handler(event, context): "fact_payment": create_fact_payment(dict_of_df), "dim_currency": create_dim_currency(dict_of_df), } - + print(immutable_df_dict.values()) + print(mutable_df_dict.values()) status = process_to_parquet_and_upload_to_s3( existing_s3_files, immutable_df_dict, mutable_df_dict, bucket ) diff --git a/tests/test_dataframes.py b/tests/test_dataframes.py index ea7bad1..7dd592a 100644 --- a/tests/test_dataframes.py +++ b/tests/test_dataframes.py @@ -1,4 +1,4 @@ -from src.dataframes import * +from src.transform_lambda.dataframes import * import pandas as pd from unittest.mock import patch from datetime import datetime as dt -- cgit v1.2.3 From d064b2ec2c7393f8de50560a7edfe100851bfea3 Mon Sep 17 00:00:00 2001 From: T-Aji Date: Wed, 28 Aug 2024 14:39:13 +0100 Subject: debugging load_lambda --- src/load_lambda.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 926b4db..272cb8c 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -164,13 +164,13 @@ def upload_dfs_to_database(): "dim_date.parquet", # this needs to be mutable "dim_location.parquet", "dim_staff.parquet", - "dim_design.parquet", + "dim_design.parquet" ] mutable_df_dict = [ "fact_sales_order", "fact_purchase_order", "fact_payment", - "dim_currency", + "dim_currency" ] for file_name, df in dict_of_dfs.items(): @@ -182,6 +182,7 @@ def upload_dfs_to_database(): df.to_sql( table_name, con=db_engine, + schema="project_team_2", if_exists="append", index=False, ) -- cgit v1.2.3 From 6235a2bb04b60d57a41196b07bbf0296920c6980 Mon Sep 17 00:00:00 2001 From: T-Aji Date: Wed, 28 Aug 2024 17:52:45 +0100 Subject: wip commit --- src/load_lambda.py | 174 +++++++++++++++++++------------ src/transform_lambda/dataframes.py | 8 +- src/transform_lambda/transform_lambda.py | 2 +- tests/test_transform_lambda.py | 2 +- 4 files changed, 115 insertions(+), 71 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 272cb8c..cdcf105 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -7,7 +7,8 @@ import logging import json import traceback from sqlalchemy import create_engine - +from datetime import datetime as dt +import re logger = logging.getLogger(__name__) @@ -15,10 +16,10 @@ logging.basicConfig( format="{asctime} - {levelname} - {message}", style="{", datefmt="%Y-%m-%d %H:%M", - level=logging.DEBUG, + level=logging.INFO, ) - -logging.getLogger("botocore").setLevel(logging.INFO) +# logging.getLogger("botocore").setLevel(logging.INFO) +# logging.getLogger('sqlalchemy.engine').setLevel(logging.DEBUG) def lambda_handler(event, context): @@ -38,10 +39,10 @@ def lambda_handler(event, context): ), } else: - logger.error(f"error") + logger.error(f"error", exc_info=True) return {"error"} except Exception as e: - logger.error({e}) + logger.error({e}, exc_info=True) return {"statusCode": 500, "body": {e}} @@ -58,10 +59,10 @@ def retrieve_secrets(client=None, secret_name=None): get_secret_value_response = client.get_secret_value(SecretId=secret_name) print(get_secret_value_response) except ClientError as e: - logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}") + logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}", exc_info=True) raise e except KeyError: - logger.error(f"Secret {secret_name} does not contain a SecretString") + logger.error(f"Secret {secret_name} does not contain a SecretString", exc_info=True) raise ValueError(f"Secret {secret_name} does not contain a SecretString") return get_secret_value_response["SecretString"] @@ -86,7 +87,7 @@ def connect_to_db_and_return_engine(sm_secret=None): engine = create_engine(conn_str) return engine except Exception as e: - logger.error(f"Interface error: {e}") + logger.error(f"Interface error: {e}", exc_info=True) raise RuntimeError("Failed to create database engine") @@ -97,7 +98,7 @@ def get_transform_bucket(client=None): try: response = client.list_buckets() except ClientError as e: - logger.error(f"Error listing S3 buckets: {e}") + logger.error(f"Error listing S3 buckets: {e}", exc_info=True) raise RuntimeError("Error listing S3 buckets") transform_bucket_filter = [ @@ -107,7 +108,7 @@ def get_transform_bucket(client=None): ] if not transform_bucket_filter: - logger.error("No transform bucket found") + logger.error("No transform bucket found", exc_info=True) raise ValueError("No transform bucket found") return transform_bucket_filter[0] @@ -117,41 +118,78 @@ def get_transform_bucket(client=None): # convert parquet files into dataframes # return a dictionary of dataframes with name as key, and dataframe object as value +def get_latest_timestamp(existing_files): + if existing_files: + all_datetimes = [] + for file_name in existing_files: + match = re.search(r"\/(.+/).+_(.+)\.parquet", file_name) + if match: + datetime_str = "".join(match.group(1, 2)) + all_datetimes.append( + dt.strptime(datetime_str, "%Y/%m/%d/%H:%M:%S") + ) + return max(all_datetimes) if all_datetimes else dt.min + return existing_files def convert_parquet_files_to_dfs(bucket_name=None, client=None): + mutable_df_dict = [ + "dim_currency", + "fact_sales_order", + "fact_purchase_order", + "fact_payment" + + ] + try: if client is None: client = boto3.client("s3") if bucket_name is None: bucket_name = get_transform_bucket() files = client.list_objects_v2(Bucket=bucket_name) - + dfs = {} if "Contents" in files: - for file in files["Contents"]: - file_key = file["Key"] + s3_key_list = [file["Key"]for file in files["Contents"]] + immutables_l = [] + mutables_d = {prefix:[] for prefix in mutable_df_dict} + for tab, s3_key in mutables_d.items(): + for file in s3_key_list: + if tab in file: + s3_key.append(file) + elif "2024" not in file: + immutables_l.append(file) + else: + continue + immutables_l = list(set(immutables_l)) + print(mutables_d,'mutables_d') + latest_s3_keys = [] + for k,v in mutables_d.items(): + latest_s3_keys.append(dt.strftime(get_latest_timestamp(v), f"{k}/%Y/%m/%d/{k}_%H:%M:%S.parquet")) + print(latest_s3_keys,'latest') + print(immutables_l,'immutables_l') + for file_key in latest_s3_keys+immutables_l: try: file_obj = client.get_object(Bucket=bucket_name, Key=file_key) parquet_file = pq.ParquetFile(BytesIO(file_obj["Body"].read())) df = parquet_file.read().to_pandas() - print("df", df) - print("type", type(df)) - print(df.columns) - dfs[file_key] = df + df_without_nulls = df.dropna() + #print("df_without_nulls", df_without_nulls) + #print("type", type(df_without_nulls)) + #print(df_without_nulls.columns) + dfs[file_key] = df_without_nulls except ClientError as e: - logger.error(f"Unable to retrieve S3 object {file_key}: {e}") + logger.error(f"Unable to retrieve S3 object {file_key}: {e}", exc_info=True) except Exception as e: - logger.error(f"Unable to process file {file_key}: {e}") + logger.error(f"Unable to process file {file_key}: {e}", exc_info=True) else: - logger.error(f"No files found in {bucket_name}.") + logger.error(f"No files found in {bucket_name}.", exc_info=True) return {} except ValueError as value_error: - logger.error(f"Unable to list objects: {value_error}") + logger.error(f"Unable to list objects: {value_error}", exc_info=True) raise except ClientError as client_error: - logger.error(f"Unable to list objects: {client_error}") + logger.error(f"Unable to list objects: {client_error}", exc_info=True) raise - print() return dfs @@ -160,53 +198,57 @@ def upload_dfs_to_database(): dict_of_dfs = convert_parquet_files_to_dfs() db_engine = connect_to_db_and_return_engine() immutable_df_dict = [ - "dim_counterparty.parquet", - "dim_date.parquet", # this needs to be mutable - "dim_location.parquet", - "dim_staff.parquet", - "dim_design.parquet" + # #"dim_counterparty.parquet", + # "dim_date.parquet", # this needs to be mutable + # "dim_location.parquet", + # "dim_staff.parquet", + # "dim_design.parquet" ] mutable_df_dict = [ + "dim_currency", "fact_sales_order", "fact_purchase_order", - "fact_payment", - "dim_currency" + "fact_payment" + ] - - for file_name, df in dict_of_dfs.items(): - print(df) - if file_name in immutable_df_dict: - table_name = file_name.split(".")[0] - print(table_name, "<<<<<") - try: - df.to_sql( - table_name, - con=db_engine, - schema="project_team_2", - if_exists="append", - index=False, - ) - upload_status["uploaded"].append(table_name) - except Exception as e: - logger.error(f"Error uploading dataframe {file_name} to database: {e}") - raise - elif file_name.rsplit("_", 1)[0] in mutable_df_dict: - table_name = file_name.rsplit("_", 1)[0] - try: - df.to_sql( - table_name, - con=db_engine, - schema="project_team_2", - if_exists="append", - index=False, - ) - upload_status["uploaded"].append(table_name) - except Exception as e: - logger.error(f"Error uploading dataframe {file_name} to database: {e}") - raise - else: - upload_status["not_uploaded"].append(file_name) - logger.error(f"{file_name} does not correspond with table in database") + with db_engine.begin() as connection: + for file_name, df in dict_of_dfs.items(): + print(df.dtypes, "dtypes") + print(df.head()) + if file_name in immutable_df_dict: + table_name = file_name.split(".")[0] + print(table_name, "<<<<<") + try: + df.to_sql( + table_name, + con=connection, + schema="project_team_2", + if_exists="append", + index=False, + ) + upload_status["uploaded"].append(table_name) + print(upload_status) + except Exception as e: + logger.error(f"Error uploading dataframe {file_name} to database: {e}", exc_info=True) + raise + elif file_name.split("/")[0] in mutable_df_dict: + table_name = file_name.split("/")[0] + print(table_name, "<<<<<< Date: Wed, 28 Aug 2024 22:46:00 +0100 Subject: fix: adds missing dataframes and resolves tables upload to end data warehouse in case the table is empty --- .gitignore | 6 +++++- src/load_lambda.py | 24 +++++++++++++----------- src/transform_lambda/dataframes.py | 19 ++++++++++++++----- src/transform_lambda/transform_lambda.py | 4 +++- 4 files changed, 35 insertions(+), 18 deletions(-) (limited to 'src/load_lambda.py') diff --git a/.gitignore b/.gitignore index 6aa03fc..480ae4b 100644 --- a/.gitignore +++ b/.gitignore @@ -14,4 +14,8 @@ __pycache__/ # OS-Related Files .DS_Store -venv \ No newline at end of file +venv + +#files +/dim_* +/fact_* \ No newline at end of file diff --git a/src/load_lambda.py b/src/load_lambda.py index cdcf105..8f921b8 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -161,18 +161,15 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): else: continue immutables_l = list(set(immutables_l)) - print(mutables_d,'mutables_d') latest_s3_keys = [] for k,v in mutables_d.items(): latest_s3_keys.append(dt.strftime(get_latest_timestamp(v), f"{k}/%Y/%m/%d/{k}_%H:%M:%S.parquet")) - print(latest_s3_keys,'latest') - print(immutables_l,'immutables_l') - for file_key in latest_s3_keys+immutables_l: + for file_key in immutables_l+latest_s3_keys: try: file_obj = client.get_object(Bucket=bucket_name, Key=file_key) parquet_file = pq.ParquetFile(BytesIO(file_obj["Body"].read())) df = parquet_file.read().to_pandas() - df_without_nulls = df.dropna() + df_without_nulls = df.dropna(how='all') #>> can't do 'any' (default) because we lose rows in dim_location #print("df_without_nulls", df_without_nulls) #print("type", type(df_without_nulls)) #print(df_without_nulls.columns) @@ -202,12 +199,14 @@ def upload_dfs_to_database(): # "dim_date.parquet", # this needs to be mutable # "dim_location.parquet", # "dim_staff.parquet", - # "dim_design.parquet" + # "dim_design.parquet", + # 'dim_transaction.parquet' #This one was missing, + 'dim_payment_type.parquet' ] mutable_df_dict = [ - "dim_currency", - "fact_sales_order", - "fact_purchase_order", + # "dim_currency", + # "fact_sales_order", + # "fact_purchase_order", "fact_payment" ] @@ -215,7 +214,9 @@ def upload_dfs_to_database(): for file_name, df in dict_of_dfs.items(): print(df.dtypes, "dtypes") print(df.head()) - if file_name in immutable_df_dict: + print(file_name,"<<< FILE NAME") + print(immutable_df_dict,"<< Date: Thu, 29 Aug 2024 09:47:58 +0100 Subject: fix: added comma. Code complete and uploads all tables in one go if no data exists per each table --- src/load_lambda.py | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 8f921b8..941ae97 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -57,7 +57,6 @@ def retrieve_secrets(client=None, secret_name=None): try: get_secret_value_response = client.get_secret_value(SecretId=secret_name) - print(get_secret_value_response) except ClientError as e: logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}", exc_info=True) raise e @@ -195,18 +194,18 @@ def upload_dfs_to_database(): dict_of_dfs = convert_parquet_files_to_dfs() db_engine = connect_to_db_and_return_engine() immutable_df_dict = [ - # #"dim_counterparty.parquet", - # "dim_date.parquet", # this needs to be mutable - # "dim_location.parquet", - # "dim_staff.parquet", - # "dim_design.parquet", - # 'dim_transaction.parquet' #This one was missing, + "dim_counterparty.parquet", + "dim_date.parquet", # this needs to be mutable + "dim_location.parquet", + "dim_staff.parquet", + "dim_design.parquet", + 'dim_transaction.parquet', #This one was missing, 'dim_payment_type.parquet' ] mutable_df_dict = [ - # "dim_currency", - # "fact_sales_order", - # "fact_purchase_order", + "dim_currency", + "fact_sales_order", + "fact_purchase_order", "fact_payment" ] -- cgit v1.2.3 From 42ad135b25044bb1c7ab8a553f038c8da9de0f75 Mon Sep 17 00:00:00 2001 From: "deepsource-autofix[bot]" <62050782+deepsource-autofix[bot]@users.noreply.github.com> Date: Thu, 29 Aug 2024 08:57:48 +0000 Subject: style: format code with Autopep8, Black and Ruff Formatter This commit fixes the style issues introduced in 48e7dae according to the output from Autopep8, Black and Ruff Formatter. Details: https://github.com/ajschofield/de-project-bentley/pull/107 --- src/load_lambda.py | 78 +++++++++++++-------- src/transform_lambda/dataframes.py | 116 ++++++++++++++----------------- src/transform_lambda/transform_lambda.py | 6 +- 3 files changed, 105 insertions(+), 95 deletions(-) (limited to 'src/load_lambda.py') diff --git a/src/load_lambda.py b/src/load_lambda.py index 941ae97..86189dc 100644 --- a/src/load_lambda.py +++ b/src/load_lambda.py @@ -58,10 +58,14 @@ def retrieve_secrets(client=None, secret_name=None): try: get_secret_value_response = client.get_secret_value(SecretId=secret_name) except ClientError as e: - logger.error(f"Failed to retrieve secret {secret_name}: {str(e)}", exc_info=True) + logger.error( + f"Failed to retrieve secret {secret_name}: {str(e)}", exc_info=True + ) raise e except KeyError: - logger.error(f"Secret {secret_name} does not contain a SecretString", exc_info=True) + logger.error( + f"Secret {secret_name} does not contain a SecretString", exc_info=True + ) raise ValueError(f"Secret {secret_name} does not contain a SecretString") return get_secret_value_response["SecretString"] @@ -117,6 +121,7 @@ def get_transform_bucket(client=None): # convert parquet files into dataframes # return a dictionary of dataframes with name as key, and dataframe object as value + def get_latest_timestamp(existing_files): if existing_files: all_datetimes = [] @@ -124,19 +129,17 @@ def get_latest_timestamp(existing_files): match = re.search(r"\/(.+/).+_(.+)\.parquet", file_name) if match: datetime_str = "".join(match.group(1, 2)) - all_datetimes.append( - dt.strptime(datetime_str, "%Y/%m/%d/%H:%M:%S") - ) + all_datetimes.append(dt.strptime(datetime_str, "%Y/%m/%d/%H:%M:%S")) return max(all_datetimes) if all_datetimes else dt.min return existing_files + def convert_parquet_files_to_dfs(bucket_name=None, client=None): mutable_df_dict = [ "dim_currency", "fact_sales_order", "fact_purchase_order", - "fact_payment" - + "fact_payment", ] try: @@ -145,12 +148,12 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): if bucket_name is None: bucket_name = get_transform_bucket() files = client.list_objects_v2(Bucket=bucket_name) - + dfs = {} if "Contents" in files: - s3_key_list = [file["Key"]for file in files["Contents"]] + s3_key_list = [file["Key"] for file in files["Contents"]] immutables_l = [] - mutables_d = {prefix:[] for prefix in mutable_df_dict} + mutables_d = {prefix: [] for prefix in mutable_df_dict} for tab, s3_key in mutables_d.items(): for file in s3_key_list: if tab in file: @@ -161,22 +164,31 @@ def convert_parquet_files_to_dfs(bucket_name=None, client=None): continue immutables_l = list(set(immutables_l)) latest_s3_keys = [] - for k,v in mutables_d.items(): - latest_s3_keys.append(dt.strftime(get_latest_timestamp(v), f"{k}/%Y/%m/%d/{k}_%H:%M:%S.parquet")) - for file_key in immutables_l+latest_s3_keys: + for k, v in mutables_d.items(): + latest_s3_keys.append( + dt.strftime( + get_latest_timestamp(v), f"{k}/%Y/%m/%d/{k}_%H:%M:%S.parquet" + ) + ) + for file_key in immutables_l + latest_s3_keys: try: file_obj = client.get_object(Bucket=bucket_name, Key=file_key) parquet_file = pq.ParquetFile(BytesIO(file_obj["Body"].read())) df = parquet_file.read().to_pandas() - df_without_nulls = df.dropna(how='all') #>> can't do 'any' (default) because we lose rows in dim_location - #print("df_without_nulls", df_without_nulls) - #print("type", type(df_without_nulls)) - #print(df_without_nulls.columns) + # >> can't do 'any' (default) because we lose rows in dim_location + df_without_nulls = df.dropna(how="all") + # print("df_without_nulls", df_without_nulls) + # print("type", type(df_without_nulls)) + # print(df_without_nulls.columns) dfs[file_key] = df_without_nulls except ClientError as e: - logger.error(f"Unable to retrieve S3 object {file_key}: {e}", exc_info=True) + logger.error( + f"Unable to retrieve S3 object {file_key}: {e}", exc_info=True + ) except Exception as e: - logger.error(f"Unable to process file {file_key}: {e}", exc_info=True) + logger.error( + f"Unable to process file {file_key}: {e}", exc_info=True + ) else: logger.error(f"No files found in {bucket_name}.", exc_info=True) return {} @@ -199,23 +211,22 @@ def upload_dfs_to_database(): "dim_location.parquet", "dim_staff.parquet", "dim_design.parquet", - 'dim_transaction.parquet', #This one was missing, - 'dim_payment_type.parquet' + "dim_transaction.parquet", # This one was missing, + "dim_payment_type.parquet", ] mutable_df_dict = [ "dim_currency", "fact_sales_order", "fact_purchase_order", - "fact_payment" - + "fact_payment", ] with db_engine.begin() as connection: for file_name, df in dict_of_dfs.items(): print(df.dtypes, "dtypes") print(df.head()) - print(file_name,"<<< FILE NAME") - print(immutable_df_dict,"<<